PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0564.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 1049aa MW: 115938 Da PI: 6.8468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0564.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	1013	1039	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Kaladp0039s0564.3.p 1013 YKCKaeGCGVSFRFISDFSRHRRKtgH 1039 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51184	16.031	1	73	IPR003347	JmjC domain
Pfam	PF02373	8.4E-16	3	56	IPR003347	JmjC domain
SuperFamily	SSF51197	1.21E-9	8	69	No hit	No description
PROSITE pattern	PS00028	0	932	956	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.3E-7	941	990	No hit	No description
PROSITE profile	PS50157	12.778	953	982	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	953	977	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	955	977	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.6E-6	960	983	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.196	983	1012	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.002	983	1007	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.7E-10	984	1007	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	985	1007	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.83E-11	993	1039	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-10	1008	1036	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	1013	1044	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.5	1013	1039	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1015	1039	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence Send to blast
MMLGEKTTLL SPEVVVASGI PCCRLVQNPG EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ 60 WLKVAKEAAV RRAAMNFLPM LSHQQLLYLL AMSFLTRVPR ALLVGARSSR LRDRMKEERE 120 LSVKKAFIED ILNEDKLLSV LRGAKSTYRA VLWDPESLPS LSKEPSLLSK MENTAANASD 180 SSNSCVFQSN HNLLDEMRFY TETMKDDYVD DDGFLSDFQV DYGAVACVAC GILGFPFMTV 240 VQPSEAASLH LRPLVENKSV AQDISCLDLD VSIDHSVSVL STPVVSSNMK VNKDQNASHR 300 FFRPRVFCLE HAVQVIELLE SKGGAEVLVI CHSDFQKIKS QAAAVAGELG SQYNYDMVPL 360 DCASLEDLNL IDLAVDEDRE ESDEDWSSVL GINLRCCIKM RKNSSSKHVD LALKLFGLPS 420 NITLGSSLSH LKWQHTRSRS KTPVLHDSKQ VSKLLSNRIK KEKKIIQYKR RKSKPKSFGS 480 APVRNTSLDC EENSASVSSD TDIAGINMSE LDNSVNINKS PASMTELNQV EGSLVTPCPS 540 LEIMHSDIVD QLEESGSVRC VCVSTSVDVV GVDNGVHDTR YKGETSLNCA VEHSSCADSP 600 VRMEGMSASE NNGQIRSTDT TNIKDTIEHE IAIHVDGKNV LTSMEPDLVA GGIPSAANPM 660 LGKTHMDNFT EWEVKDEVCA VIPHNERSNE GSPSLLSQSL TQMSAFEGSS TLLPLASCST 720 EEYVLVKDTQ SSKVADTPGT EENLCSASLD KLRDNSINAE PAYLVSIETS VGDDSSYEVV 780 QIRTLKGVDD KEDPNNCRLT DFNQVSLMSA GDESAAAKYM GASKNLYDVK TGETENNRVK 840 PKPSNRNARK RNRELEKLRD NKNEVADFIR SPCEGLRPRS KIASSSHNID VRHSYTEEPA 900 IAKKKLKHIP ADTSTSTPNK TGKQESKGWH RCDLECCILS FKTKAKLLLH QQNQCHIQGC 960 GKKFSCHRYL IVHQRVHVDD RPLKCSWKGC NMSFKWAWAR TEHLRVHTGE RPYKCKAEGC 1020 GVSFRFISDF SRHRRKTGHG GDTHSPLG*

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence Send to blast

MMLGEKTTLL SPEVVVASGI PCCRLVQNPG EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ  60
WLKVAKEAAV RRAAMNFLPM LSHQQLLYLL AMSFLTRVPR ALLVGARSSR LRDRMKEERE  120
LSVKKAFIED ILNEDKLLSV LRGAKSTYRA VLWDPESLPS LSKEPSLLSK MENTAANASD  180
SSNSCVFQSN HNLLDEMRFY TETMKDDYVD DDGFLSDFQV DYGAVACVAC GILGFPFMTV  240
VQPSEAASLH LRPLVENKSV AQDISCLDLD VSIDHSVSVL STPVVSSNMK VNKDQNASHR  300
FFRPRVFCLE HAVQVIELLE SKGGAEVLVI CHSDFQKIKS QAAAVAGELG SQYNYDMVPL  360
DCASLEDLNL IDLAVDEDRE ESDEDWSSVL GINLRCCIKM RKNSSSKHVD LALKLFGLPS  420
NITLGSSLSH LKWQHTRSRS KTPVLHDSKQ VSKLLSNRIK KEKKIIQYKR RKSKPKSFGS  480
APVRNTSLDC EENSASVSSD TDIAGINMSE LDNSVNINKS PASMTELNQV EGSLVTPCPS  540
LEIMHSDIVD QLEESGSVRC VCVSTSVDVV GVDNGVHDTR YKGETSLNCA VEHSSCADSP  600
VRMEGMSASE NNGQIRSTDT TNIKDTIEHE IAIHVDGKNV LTSMEPDLVA GGIPSAANPM  660
LGKTHMDNFT EWEVKDEVCA VIPHNERSNE GSPSLLSQSL TQMSAFEGSS TLLPLASCST  720
EEYVLVKDTQ SSKVADTPGT EENLCSASLD KLRDNSINAE PAYLVSIETS VGDDSSYEVV  780
QIRTLKGVDD KEDPNNCRLT DFNQVSLMSA GDESAAAKYM GASKNLYDVK TGETENNRVK  840
PKPSNRNARK RNRELEKLRD NKNEVADFIR SPCEGLRPRS KIASSSHNID VRHSYTEEPA  900
IAKKKLKHIP ADTSTSTPNK TGKQESKGWH RCDLECCILS FKTKAKLLLH QQNQCHIQGC  960
GKKFSCHRYL IVHQRVHVDD RPLKCSWKGC NMSFKWAWAR TEHLRVHTGE RPYKCKAEGC  1020
GVSFRFISDF SRHRRKTGHG GDTHSPLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	8e-48	930	1039	23	132	Lysine-specific demethylase REF6
6a58_A	8e-48	930	1039	23	132	Lysine-specific demethylase REF6
6a59_A	8e-48	930	1039	23	132	Lysine-specific demethylase REF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021826770.1	1e-174	probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	1e-150	ELF6_ARATH; Probable lysine-specific demethylase ELF6
STRING	XP_008233302.1	1e-173	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-132	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0564.3.p

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]