PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0590.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 181aa    MW: 19686.8 Da    PI: 6.8855
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0590.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.11.7e-5526123198
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddll+a++tlGfe+y++pl+ yl++y
  Kaladp0039s0590.2.p  26 VREQDRYLPIANISRIMKKALPPNGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLHAMSTLGFENYIDPLRFYLSRY 115
                          69**************************************************************************************** PP

                NF-YB  91 relegekk 98 
                          releg++k
  Kaladp0039s0590.2.p 116 RELEGDTK 123
                          *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-5224131IPR009072Histone-fold
SuperFamilySSF471134.35E-4029146IPR009072Histone-fold
PfamPF008083.9E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-197997No hitNo description
PRINTSPR006151.6E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MADVPNSPNA GSHDSGGGDH SPRPNVREQD RYLPIANISR IMKKALPPNG KIAKDAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLHAMSTLG FENYIDPLRF YLSRYRELEG  120
DTKGSVRAEG SARKDVGGGH MNSNAQLAHQ GSFTQAIHYI NSQSPTQHLV APSVPGSEYD  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4826117192Transcription factor HapC (Eurofung)
4g92_B1e-4826117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278716.14e-93PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_003633465.14e-93PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_010658455.14e-93PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
SwissprotQ9SLG03e-70NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLD7TMF33e-88D7TMF3_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03600.t014e-89(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.53e-70nuclear factor Y, subunit B1