PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0622.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 372aa MW: 40818.4 Da PI: 9.0538

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0622.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9e-38	82	141	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+al+cprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+ k+s Kaladp0039s0622.1.p 82 ETALRCPRCESSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRATKRS 141 67899*************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-34	65	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MVFSSRPLYF DPPNQQYHHQ HQQQQQQQQQ VSLFGAGNEI SNTSSLQHLP PQQPPVAPGG 60 SRTIRPGSMT DRARMAKVPL PETALRCPRC ESSNTKFCYF NNYSLTQPRH FCKTCRRYWT 120 RGGALRNVPV GGGCRRATKR SSKKRLKSPA ASGTDIATTT NSTDQAFGSS SSAGLNGNNS 180 MDGACYLPFY PKGMSQMGHE FEAHYTGGES FGGAPNDPHI AKLFQNDQQW GRLAEATTGS 240 SAVTATLLTQ MHPPFPFMDN LAQQHQQEHS AIPSGLLYQF NQQGLSGSTL DSLRTCSNSS 300 MMNKSMMDPM AMSQFANIKM EDSNDKGLRR LLGLQTQAAA SNHMTSGDHQ FNWLDNGTAN 360 AWTDLSGFYT P*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MVFSSRPLYF DPPNQQYHHQ HQQQQQQQQQ VSLFGAGNEI SNTSSLQHLP PQQPPVAPGG  60
SRTIRPGSMT DRARMAKVPL PETALRCPRC ESSNTKFCYF NNYSLTQPRH FCKTCRRYWT  120
RGGALRNVPV GGGCRRATKR SSKKRLKSPA ASGTDIATTT NSTDQAFGSS SSAGLNGNNS  180
MDGACYLPFY PKGMSQMGHE FEAHYTGGES FGGAPNDPHI AKLFQNDQQW GRLAEATTGS  240
SAVTATLLTQ MHPPFPFMDN LAQQHQQEHS AIPSGLLYQF NQQGLSGSTL DSLRTCSNSS  300
MMNKSMMDPM AMSQFANIKM EDSNDKGLRR LLGLQTQAAA SNHMTSGDHQ FNWLDNGTAN  360
AWTDLSGFYT P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	8e-44	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Kaladp0039s0622.1.p