PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0641.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 209aa MW: 22988.2 Da PI: 5.5212

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0641.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.8	2.8e-36	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkCa++C++apyf+ +q + +f +vh++FGasn +kll +lp + r+ a+ ++ yeA ar++dP+yG+v+++l lqqq+ q Kaladp0039s0641.1.p 7 SCGACKFLRRKCATECIFAPYFCYDQaAVHFSAVHRVFGASNFSKLLLHLPMHSRSVAAMTVSYEALARMHDPIYGCVAHVLLLQQQVVQ 96 6**********************9789********************************************************* PP DUF260 90 lkaelallkee 100 l++e+++l+++ Kaladp0039s0641.1.p 97 LEKEIEMLEKQ 107 ***999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.733	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-33	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCAT ECIFAPYFCY DQAAVHFSAV HRVFGASNFS KLLLHLPMHS 60 RSVAAMTVSY EALARMHDPI YGCVAHVLLL QQQVVQLEKE IEMLEKQMAM AWFDISGAAA 120 APSSTQSANI DFYGLQVETT ELDMDVRGYS TAQQTSSQLL TASANAAAID QRSREEKSWF 180 LSPDPMGQES FMHCYAESFA ETLNTQVI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	3	108	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	3	108	7	111	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316271.2	3e-62	LOB domain-containing protein 29
Refseq	XP_011002633.1	2e-62	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9LHS8	5e-52	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	B9HT79	5e-61	B9HT79_POPTR; Uncharacterized protein
STRING	POPTR_0010s20800.1	8e-62	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	4e-48	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Kaladp0039s0641.1.p

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]