PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0040s0052.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 199aa MW: 22391.6 Da PI: 10.0163

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0040s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.4e-06	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kaladp0040s0052.1.p 84 FVCEICSKGFQRDQNLQLHRRGH 106 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.56E-5	83	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	84	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.56E-5	156	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MFSSKLPNFS EEAAAPASVS SSDKINIAHH HEFGTLNPSS SQIPSTNLDQ PVKTKKKRNL 60 PGNPDPDAEV IALSPKTLLA TNRFVCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRSSNDV 120 VRKRAYVCPE PTCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCCKIY AVQSDWKAHS 180 KTCGTREYRC DCGTLFSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-21	157	198	3	44	Zinc finger protein JACKDAW
5b3h_F	2e-21	157	198	3	44	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021281006.1	1e-103	protein indeterminate-domain 12
Refseq	XP_022864676.1	1e-105	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	6e-96	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A061DRD1	1e-102	A0A061DRD1_THECC; Indeterminate(ID)-domain 12
TrEMBL	A0A2P6PVQ8	1e-102	A0A2P6PVQ8_ROSCH; Putative transcription factor C2H2 family
STRING	EOX94636	1e-103	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	8e-86	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0040s0052.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]