PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0192.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 288aa    MW: 32221.4 Da    PI: 4.5915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0192.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11186229654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++P  +      K++  +iL  +++Y+k+L
  Kaladp0040s0192.3.p 186 LMAERRRRKRLNDRLSMLRSIVPRiS------KMDRTSILADTIDYMKEL 229
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-15183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9186229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-5187229No hitNo description
Gene3DG3DSA:4.10.280.106.7E-16187243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELSQPFLLE EWLAMKRENC STYQTGVEMS EFYTDGWSCD FIDEPQALAA STDVAMGTAT  60
GFAMPQMEPY FDVPFSEVYN TLDACFDAPA PAAADQFNLA YEINNGATLL PPIPDQNTSM  120
MDEDFTFFSN DCVELMKEDK HASGCKVEMV LSPNENLGSS TSKMSGGGRE RRNGAKKAGG  180
QPSKNLMAER RRRKRLNDRL SMLRSIVPRI SKMDRTSILA DTIDYMKELI EKVSKLEEEE  240
EEHTEAGPIN KLKELKSSEG QAKNSPKVSL SKWLLIIRSS CEHFLTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188195ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.22e-22beta HLH protein 93