PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0240.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 392aa    MW: 43952 Da    PI: 4.4921
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0240.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.42.1e-281011931102
                          HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          +F +klyei++d++++ l++w  +g+sf+v+d + f + +LpkyFkh++f SF+ QL+ YgF+k++  +         we+++++F++gk
  Kaladp0040s0240.2.p 101 QFFSKLYEIVDDPNTDYLVQWGFDGQSFLVHDANAFCDFILPKYFKHNHFFSFTLQLHHYGFQKIDAAK---------WEYANEEFQRGK 181
                          599**************************************************************9988.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          k+ll++ikr+ s
  Kaladp0040s0240.2.p 182 KHLLRYIKRRIS 193
                          *********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-3798191IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.8E-3098191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-2798191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-25102191IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-13102125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-13140152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-13153165IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEFDRVVAQC DQAQKTRGES SNTSLANNQL GLITASSASG VLEAGPDASS PHVNNKISEI  60
VTEMVANVGQ GIDVVPSCFS QEVIILPRQT HEKLREIGVP QFFSKLYEIV DDPNTDYLVQ  120
WGFDGQSFLV HDANAFCDFI LPKYFKHNHF FSFTLQLHHY GFQKIDAAKW EYANEEFQRG  180
KKHLLRYIKR RISGNRMEFE SEKQDETLKD AQIANLSKQM SAFEERMQLI ELEYKKIACF  240
LSQTIQNPGF IAELIRGKAS LEAKPSEQEM ATAVSDDTTK VPSASNHILL VNAQTTPNQT  300
TTGMKTYVGM TYPSFGESSS SPAEAQGSAK EMALNSLESQ HDELMNASEA CDQGFVDEQF  360
LDYFPVLESL IDEESDGWDF YEDAQPIDRK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-199919326131Heat shock factor protein 1
5d5v_B3e-199919326131Heat shock factor protein 1
5d5v_D3e-199919326131Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-36heat shock transcription factor A7A