PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0245.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 260aa    MW: 27143.2 Da    PI: 8.7141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-05140185454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ah +  r R +++ +++++L++l+ +      +K + a++L +A+ YIk L
  Kaladp0040s0245.1.p 140 AHAAKPRPRKEKLGERIATLQQLVSPF-----GKTDTASVLHEAMSYIKFL 185
                          68888899999**************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.747136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12138198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-8140194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-5148190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MADDDRPEPR SFYQLLFSDP IVTLNTSKAA ADVTGPDYSE SFYGPNPPKM LCFGAYQKEE  60
EAICSEITAA ALRQMVSQSD SSSTSSGNRH NSSSGKSSTA EPKPNPNRKR TGSGRNPVGG  120
GASAEGKKTR SEKPAAAAPA HAAKPRPRKE KLGERIATLQ QLVSPFGKTD TASVLHEAMS  180
YIKFLHDQVQ VLSSPYLHSS PNQGGGDGGA VGLRSRGLCL VPVSCTAQVD GSTNGADFWA  240
PAAGINISSC VNLASSTKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239175.13e-54transcription factor bHLH113 isoform X2
TrEMBLA0A151U7S77e-53A0A151U7S7_CAJCA; Transcription factor bHLH113 family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.17e-38bHLH family protein