PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0346.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 132aa    MW: 14456.6 Da    PI: 6.78
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0346.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-151254143
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         k+i ++ +r vtf+kRr+g++KK eEL vL++ + a ++fs+ 
  Kaladp0040s0346.1.p 12 KKIHDSEKRFVTFCKRRKGLFKKVEELGVLTGCRMAAVVFSPA 54
                         6899*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-17463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.502452IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-18579IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-11626IPR002100Transcription factor, MADS-box
PfamPF003195.2E-181358IPR002100Transcription factor, MADS-box
CDDcd001209.06E-151661No hitNo description
PRINTSPR004041.1E-112641IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-114162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGGTGKKKIE IKKIHDSEKR FVTFCKRRKG LFKKVEELGV LTGCRMAAVV FSPAAEKPHA  60
CGDMSLLDQY VADSGTDLVQ TRPRDDVVVE AALEAHASRD LGEVDDLNEL GAMRTELERI  120
RETLVRGLDL G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G2W7L61e-18A0A2G2W7L6_CAPBA; Agamous-like MADS-box protein AGL61
STRINGXP_009603478.16e-17(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-12AGAMOUS-like 61