PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0359.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79855.6 Da    PI: 6.1533
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0359.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-2058113156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Kaladp0040s0359.1.p  58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
                          688999***********************************************998 PP
2START217.74e-682444641206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+a++p+W  s+    e++ ++e+l++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     
  Kaladp0040s0359.1.p 244 ELAVAAMEELIRMAQAGDPLWIPSAdnstEILCEEEYLRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSIFSgivs 332
                          57899********************99999999**********999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+tlev+s+g      galq+++ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p    v R++++pSg+li++++ng
  Kaladp0040s0359.1.p 333 RAMTLEVLSTGvagnynGALQVITAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDSLRPSP----VTRSRRRPSGCLIQEMPNG 418
                          *****************************************************************98....7****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwvehv+ ++r +h+++r+lv+s +a+gak+wvatl+rqce+
  Kaladp0040s0359.1.p 419 YSKVTWVEHVEADDRGVHNIYRPLVNSNHAFGAKRWVATLDRQCER 464
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2237113IPR009057Homeodomain-like
SuperFamilySSF466895.85E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007116.69855115IPR001356Homeobox domain
SMARTSM003893.1E-1956119IPR001356Homeobox domain
CDDcd000868.75E-1958116No hitNo description
PfamPF000461.2E-1758113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
SuperFamilySSF559617.77E-37235466No hitNo description
PROSITE profilePS5084845.162235467IPR002913START domain
CDDcd088751.79E-127239463No hitNo description
SMARTSM002342.2E-68244464IPR002913START domain
PfamPF018527.5E-57245464IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-6343459IPR023393START-like domain
SuperFamilySSF559615.89E-24483721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MYQPNLFVDT SHHLLLDMGH SKTPDNELGS LRDEDFESKS GTEAQSGDEQ DPNQRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKGQHERHE  120
NSQLRAENEK LRADNMRYKE ALGNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYIGK PLVTYPHLPS RPSLEIGVGN FGPGGMAEGD MFGVSDLLRS VSGPTEADKP  240
IIIELAVAAM EELIRMAQAG DPLWIPSADN STEILCEEEY LRTFPRGIGP KPLGLKSEAS  300
RESAVVIMNH INLVEILMDV NQWSSIFSGI VSRAMTLEVL STGVAGNYNG ALQVITAEFQ  360
VPSPLVPTRE NYFVRYCKQH PDGTWAVVDV SLDSLRPSPV TRSRRRPSGC LIQEMPNGYS  420
KVTWVEHVEA DDRGVHNIYR PLVNSNHAFG AKRWVATLDR QCERLASLMA SNINTGDVGV  480
ITRPDGRKSM LKLAERMVMS FCGGVGASTA HTWTTLSGTS ADDVRVMTRK SMDDPGRPPG  540
IVLSAATSFW IPVSSKRVFD FLRDENSRNE WDILSNGGLV QEMAHIANGR DPGNCVSLLR  600
VNSANSSQSN MLILQESSTD VTGSYVIYAP VDIVAMNVVL NGGDPDYVAL LPSGFAILPD  660
NGLSSLAPIV GQHGVLDVGS GGSLLTVAFQ ILVDSIPTAK LSLGSVATVN SLIKCTVERI  720
KAALSCP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266688.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A438JG680.0A0A438JG68_VITVI; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLE0CVM00.0E0CVM0_VITVI; Uncharacterized protein
STRINGVIT_10s0116g00680.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]