PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0440.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Nin-like
Protein Properties Length: 319aa    MW: 35561.1 Da    PI: 5.751
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.41.4e-23135182552
               RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ++ + ls+yF+lpi++AA+eL+++lT+ K++CR++G++RWPhRk+ s+
  Kaladp0040s0440.1.p 135 LTWDILSQYFYLPIAQAARELNIGLTLFKKRCRELGVRRWPHRKLMSI 182
                          77889****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.223111203IPR003035RWP-RK domain
PfamPF020427.2E-20135182IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDYGLDKDNF LHAPFQPTDS SFLAMSAASS EPLDYYSDVG LQSLLEFQYE SLLLPAAADD  60
SVKMVDGESD QYDSPYASFN VTGHHLLDDS LVFERGGLSM DSNVAETELG QKGSKAKRGR  120
RRCSASVNNS AAELLTWDIL SQYFYLPIAQ AARELNIGLT LFKKRCRELG VRRWPHRKLM  180
SIKSLIKNVQ EMEKESNPAV SKETVRSAVQ VLEGQMKMME VMPDVQLEAQ TKRLRQACFK  240
ANYKKRRLMI MNGLTNSAGS ASSSSQGRYS TSSSSVNHVS SMSRTEAIEQ DFKDSEELKS  300
LLFDSLSPSE CTFLNDFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021287140.12e-55protein RKD1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-45RWP-RK domain-containing protein