PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0040s0544.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 330aa MW: 35629.7 Da PI: 8.074

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0040s0544.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.4	1.9e-60	123	277	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 r g++sCqdCGnqakk+C+h+RCRtCC srgfdC+thvkstWvpaakrrerqqq++ + ++ +a+a++++s + s ++ a s ++l Kaladp0040s0544.1.p 123 RRGSISCQDCGNQAKKECVHMRCRTCCMSRGFDCQTHVKSTWVPAAKRRERQQQMKRLRQDPKAAASASNSSLACT--SLTRLAPSPSTL 210 57899************************************************999888766554444443333..345555555555 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvdd.g....eeelaYqtavsigGhvfkGiLydqGlee 154 ++ + + +lP+ev+s avf+cvrvs +++ g e++laYqt+v+igGh+f+GiLydqG+++ Kaladp0040s0544.1.p 211 GEG-GRWATVGDELPREVRSCAVFKCVRVSPIEQqGeeglEQQLAYQTSVNIGGHLFRGILYDQGPQN 277 565.456778888***************984322334679*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-56	126	276	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-21	223	275	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MSGFFSLGGA NPQQPHHLNS SPETLIPPGN WFELRNEKLA ATYRRRGAIE LWHQQACHER 60 SSRSYDISNN PTSTSHLLGF GVGPTSVGAI DTSTQSDDQS VALGMITMSG SSCGVGLGSG 120 DGRRGSISCQ DCGNQAKKEC VHMRCRTCCM SRGFDCQTHV KSTWVPAAKR RERQQQMKRL 180 RQDPKAAASA SNSSLACTSL TRLAPSPSTL GEGGRWATVG DELPREVRSC AVFKCVRVSP 240 IEQQGEEGLE QQLAYQTSVN IGGHLFRGIL YDQGPQNHHY HHHSDCINLV SNTQQHASFG 300 ADPTAATNLY QAPNATFPGA SVVCTHFCP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	2e-47	SHI-related sequence 7

Link Out ? help Back to Top
Phytozome	Kaladp0040s0544.1.p