PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0561.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 307aa    MW: 33869.5 Da    PI: 7.5019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0561.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.9e-06185229655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++ r+RR++i ++ +eL +l+P         +++ ae+ + A  Y+k Lq
  Kaladp0040s0561.1.p 185 SIAARQRRRKIADKTQELGKLIPGgH------RMNTAEMFQSASMYVKFLQ 229
                          6788*******************954......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.509179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-6182233No hitNo description
SuperFamilySSF474592.75E-9183237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9183236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGLSCYMSNR SAADYMLQQE QLLLELGCFQ DDFTLAHTSI DALFHPPQQK HPSFIPQPPQ  60
LPTTHFENFS SQLLPCVQQK SCHPKRQKIA PWPHPNQQSD THFNYDSMLA CGTAPFVDGC  120
WSSAADDAQL LLPLAQEFQG GDQSWLQDDF PAEAFLCGAT ADRPGSGNNS SRPGRGGGGG  180
LSAQSIAARQ RRRKIADKTQ ELGKLIPGGH RMNTAEMFQS ASMYVKFLQA QIAMLTLTDS  240
LQVTLNSNLI QVLVASPVVQ EKLYTQEKCL VPRRLVQSLP RDSKLQSLHP SLIKQINNLL  300
QTPRAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.14e-25bHLH family protein