PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0040s0625.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 420aa MW: 46006.1 Da PI: 6.5131

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0040s0625.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.2	2e-09	223	281	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++ ++L +l l+ l+ e+ Kaladp0040s0625.3.p 223 KRAKRIWANRQSAARSKERKMRYIAELERKVQALQTDATSLSAQLALLQRDTNGLTVEN 281 9********************************************99998887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-15	219	283	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	221	284	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	223	274	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.15E-10	223	274	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.1E-10	223	277	No hit	No description
CDD	cd14703	2.46E-24	224	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDKDKLPSHG GGLLPPSGRF QTFSPAGNTF NMSSEASAST LPPMGPGATM DSGRFGHGMP 60 SDSGRFSYDI SQMPDNPPKH LGHRRAHSEI LTLPDDINFD SDLGVVGVMD GPTFSDDTEE 120 DLFSMYLDME KLNSSSATSS FPSTDPMNTT TSAPCTGTDQ SLNAVGTSGE RPRVRHQHSQ 180 SMDGSSTIKT ETLMSGSEDT SAADSKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE 240 RKMRYIAELE RKVQALQTDA TSLSAQLALL QRDTNGLTVE NSELKLRLQT MEQQVHLQDA 300 LNDALKEEIQ HLKVLTGQTM PNGGPMMSYS TFGGNQSHYP SNQSMHTLMA AQQFQQLQIH 360 SQKQQHHQFQ QHQLLQLQQQ QLHQQLDQQQ KSGDLKARST MPSPSQKDNA PESNQAPKE*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDKDKLPSHG GGLLPPSGRF QTFSPAGNTF NMSSEASAST LPPMGPGATM DSGRFGHGMP  60
SDSGRFSYDI SQMPDNPPKH LGHRRAHSEI LTLPDDINFD SDLGVVGVMD GPTFSDDTEE  120
DLFSMYLDME KLNSSSATSS FPSTDPMNTT TSAPCTGTDQ SLNAVGTSGE RPRVRHQHSQ  180
SMDGSSTIKT ETLMSGSEDT SAADSKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE  240
RKMRYIAELE RKVQALQTDA TSLSAQLALL QRDTNGLTVE NSELKLRLQT MEQQVHLQDA  300
LNDALKEEIQ HLKVLTGQTM PNGGPMMSYS TFGGNQSHYP SNQSMHTLMA AQQFQQLQIH  360
SQKQQHHQFQ QHQLLQLQQQ QLHQQLDQQQ KSGDLKARST MPSPSQKDNA PESNQAPKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ857085	1e-36	JQ857085.1 Rhodiola bupleuroides clone Rb720 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867590.1	0.0	probable transcription factor PosF21
Refseq	XP_015867591.1	0.0	probable transcription factor PosF21
Refseq	XP_015867592.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-148	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M5XCD0	0.0	M5XCD0_PRUPE; Uncharacterized protein
STRING	XP_008222595.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-137	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0040s0625.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]