PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0041s0010.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 330aa    MW: 37172.3 Da    PI: 6.4431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0041s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-06167186120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          y+Cp C ksFsr  nL+ H+
  Kaladp0041s0010.1.p 167 YSCPVCFKSFSRYNNLQMHM 186
                          99*****************9 PP
2zf-C2H217.21.4e-05251273123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +CgksF  k + ++H +++
  Kaladp0041s0010.1.p 251 FTCRKCGKSFAVKGDWRTHEKNC 273
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-5159189No hitNo description
Gene3DG3DSA:3.30.160.607.7E-7167186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596167194IPR007087Zinc finger, C2H2
SMARTSM003550.13167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4237271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.28E-5237271No hitNo description
PROSITE profilePS501578.891251271IPR007087Zinc finger, C2H2
SMARTSM0035528251271IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDFLSSDNS SVTCNGLSYF NFIPLNPNPN SLPRTLPLLD KNEPAQSSPA TTPMDEDYYC  60
GSCFCNNKRR SGRGSSSTNV ALSLNIGLPD DETYSSTVVS SSSSSSNLLE LHKSLFGDEP  120
FQEEGEEDEE EDHDDEMGLL ECIPLERSAT QYWIPTPTQI LNGPTQYSCP VCFKSFSRYN  180
NLQMHMWGHG SQYRKGTESL RGVQPRAMLR LPCYCCTQGC KHHIDHPKSR PLKDFRTLQT  240
HYKRKHGTKS FTCRKCGKSF AVKGDWRTHE KNCGKFWYCA CGSDFKHKRS LKDHVRAYKE  300
DGQAGHAAIG IEDYMEHDGD DHGCVIESE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888258.11e-102zinc finger protein WIP2-like
RefseqXP_022888259.11e-102zinc finger protein WIP2-like
SwissprotQ9SVY12e-96ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2R6RD161e-104A0A2R6RD16_ACTCH; Zinc finger protein
STRINGPavir.Fa00506.1.p1e-100(Panicum virgatum)
STRINGXP_008795700.11e-101(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-96C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]