PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0084.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 357aa    MW: 38411.3 Da    PI: 10.3555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30280337359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+++WrKYGqK++kgs++pr+YY+C+s  gCp+kk+ver+ +dp+ +++tY g+Hnh 
  Kaladp0042s0084.1.p 280 DEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPAKKHVERAVDDPTQLIVTYDGDHNHA 337
                          99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-15232276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-31267337IPR003657WRKY domain
PROSITE profilePS5081129.356273339IPR003657WRKY domain
SuperFamilySSF1182901.7E-25275338IPR003657WRKY domain
SMARTSM007741.6E-35278338IPR003657WRKY domain
PfamPF031063.3E-25280336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAVELMMGYR AAAAENNLPA RMEEAASAGL QSVEQLIRLL SQRQQQMDRS NSSNSCVNES  60
SSKVESSDLD YGAVADVAVN KFKKMISLLD RSRTGHARFR RAPVAQRAAD PVAQTSLRSE  120
EKASAQSSLN GGPRAIPTST SSQRLPPLPQ HHHHHHHHSL PVHHKIVHSA NTVLTKTAPK  180
DSTATISFSG ASSFVSGLSG ETESVQPSMS SGFQFTLMSQ SSGKPPLSTS LKRKCSSVDD  240
SARCGGSSAR CHCSKKRKSR VKRVVRIPAI SLKMADIPPD EFSWRKYGQK PIKGSPHPRG  300
YYKCSSVRGC PAKKHVERAV DDPTQLIVTY DGDHNHALTS VKEAAAAAAA LVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20266338273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884353.11e-124probable WRKY transcription factor 7
SwissprotQ9STX08e-89WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A200QZM31e-124A0A200QZM3_9MAGN; DNA-binding WRKY
STRINGevm.model.supercontig_21.1591e-121(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-70WRKY DNA-binding protein 7