PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0108.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 293aa    MW: 30281.9 Da    PI: 6.9865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016131153123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC  Cgk F +   L  H  +H
  Kaladp0042s0108.1.p 131 YKCAVCGKEFGSYQALGGHKASH 153
                          9*********9999998888777 PP
2zf-C2H213.10.00028184206123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F++   L  H r+H
  Kaladp0042s0108.1.p 184 HECGICHKQFPTGQALGGHKRRH 206
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-8130206No hitNo description
PROSITE profilePS5015710.118131153IPR007087Zinc finger, C2H2
PfamPF139122.0E-12131155IPR007087Zinc finger, C2H2
SMARTSM003550.062131153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
PfamPF139128.5E-12183208IPR007087Zinc finger, C2H2
SMARTSM003550.22184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85184206IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MATEALSHHP PGLSEAEDLG CKNKQAGSLL DGGFAKRKRS KRPRCEGGGG GGEEELVGAL  60
SEADMDLARS LMMLANGVVE EERVGEVKVG GGGEPDGGCL GAKESVSMED VSVPPLLTVA  120
ETGSAVKTES YKCAVCGKEF GSYQALGGHK ASHRKLFADN IETAAATAVM TAAGGGATGG  180
GRVHECGICH KQFPTGQALG GHKRRHYEGT LGKQSHQSHN HKTAASSSGV TTATTSDGAG  240
SSLSHRGFDL NIPALPDLWP VSRFAAVEEE VESPHPAKKP RVFSPNYVQI RI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-30salt tolerance zinc finger