PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0334.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 244aa    MW: 27615.3 Da    PI: 6.3831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0334.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-134591455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +h  +ErrRR++++ +f  Lr+l+P+       K++K++iL  +++Y+k+L+
  Kaladp0042s0334.1.p 45 NHVLAERRRREKLKRRFLVLRSLVPTT-----AKVDKISILDDTIKYLKELE 91
                         6899**********************6.....5****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3234190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1743104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-104591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1745105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-144796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MHSEGLLGPP EKDHKNVIQK GCDDTYLPEA EDLIDMDLPE ETGLNHVLAE RRRREKLKRR  60
FLVLRSLVPT TAKVDKISIL DDTIKYLKEL ERKIDELESA KETAANTETT MVTKSAQDGT  120
KETSSYNYEV EETHIASKKR RKAFDTGGNN INRRASSKRE CNDDLVVEVE DKDVRVEVRC  180
GWRKGLVPEV MEALSDLDLE STSVCTRSSD GILYLKITSK VQGLKVASAK LIKQEMERIV  240
HNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1341101464Transcription factor MYC2
5gnj_B3e-1341101464Transcription factor MYC2
5gnj_E3e-1341101464Transcription factor MYC2
5gnj_F3e-1341101464Transcription factor MYC2
5gnj_G3e-1341101464Transcription factor MYC2
5gnj_I3e-1341101464Transcription factor MYC2
5gnj_M3e-1341101464Transcription factor MYC2
5gnj_N3e-1341101464Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
3137141KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.38e-27bHLH family protein