PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0372.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24512.3 Da    PI: 5.4723
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0372.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-191569256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          kR++f+++q++ Le lF ++++p  +++++LA+ l L  rqV +WFqNrRa+ +
  Kaladp0042s0372.1.p 15 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLALHPRQVAIWFQNRRARLR 69
                         58***************************************************87 PP
2HD-ZIP_I/II107.41.1e-3415107193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ek+rr+s++q+k+LE  F +e+k ep+ K++la++L l+prqva+WFqnrRAR ++kq+E++y  Lk+++d+l+++ e L+ke+++L ++
  Kaladp0042s0372.1.p  15 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLALHPRQVAIWFQNRRARLRSKQIEREYGILKASHDTLASKFECLKKEKQTLDAQ 104
                          699*************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Kaladp0042s0372.1.p 105 VQA 107
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-17672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-18976IPR009057Homeodomain-like
PROSITE profilePS5007117.4591171IPR001356Homeobox domain
SMARTSM003897.2E-141375IPR001356Homeobox domain
PfamPF000461.3E-161569IPR001356Homeobox domain
CDDcd000865.82E-131672No hitNo description
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PfamPF021834.3E-1671112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMSLEMGGSR GGKNEKRRRF SEKQIKSLEI LFGSESKPEP RTKQQLASDL ALHPRQVAIW  60
FQNRRARLRS KQIEREYGIL KASHDTLASK FECLKKEKQT LDAQVQALRD QLRTDEGNIA  120
GSALPSKQSW RNEEPEIEDY FHESKGKPTY IMESYNYETD NKSNPDCLKE EDYILNLAEP  180
VDSSLTSSEN SWDSSCFLDQ TCSSSLLWEF WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419EKRRRF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9FZI84e-49A0A2N9FZI8_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-47homeobox 7