PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0006.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 462aa    MW: 51323.8 Da    PI: 4.3505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1202.2e-3729734128
                  NAM  34 ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                          i+e+d+yk++P+dLp + k++++++ w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ +++ vglkktLvfy+grap+g++t+W
  Kaladp0043s0006.1.p   2 ISETDVYKWDPEDLPgQsKLQTGDRLWFFFSPRDRKYPNGARSNRATHHGYWKATGKDRRITC-NSRPVGLKKTLVFYRGRAPTGTRTNW 90 
                          899***********96358899999**************************************.999*********************** PP

                  NAM 122 vmheyrl 128
                          vmhey+l
  Kaladp0043s0006.1.p  91 VMHEYTL 97 
                          *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.2821120IPR003441NAC domain
SuperFamilySSF1019416.93E-412120IPR003441NAC domain
PfamPF023654.2E-151697IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MISETDVYKW DPEDLPGQSK LQTGDRLWFF FSPRDRKYPN GARSNRATHH GYWKATGKDR  60
RITCNSRPVG LKKTLVFYRG RAPTGTRTNW VMHEYTLDEE ELKRCQNVGV YFALYKVYMK  120
SGPGPKNGEQ YGAPFKEEDW ADEECTEVGS NAVEVANLSE TLNMPMDGMI RIGDNFIGVV  180
DEVEPWNSSA ESRALLQLQS ADCFHQDPVV HPVSQRSDMG CSFDYSQPVA SHVVEAPDIS  240
SGLNVDELNN FLADGDFLEA NDLLGPEPIT WGDDNPLENQ WVDNTYDELG EWDLFDDASI  300
FLHDTGASDL FNGDDGMLNN FEYQPQLNDA SNVTSELWVH EDPNINEHLS VQPGSIIGGN  360
TSISTLQDNQ NHNGSTSCPQ NRVTSALWAF VESIPTTPAS ASESILLNKA FERVSSFRRL  420
GAMNSLTVGD TKESAKHSKS RGIILLSIVG ALCAMIWVLM A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-3319948144NO APICAL MERISTEM PROTEIN
1ut4_B2e-3319948144NO APICAL MERISTEM PROTEIN
1ut7_A2e-3319948144NO APICAL MERISTEM PROTEIN
1ut7_B2e-3319948144NO APICAL MERISTEM PROTEIN
3swm_A2e-3319951147NAC domain-containing protein 19
3swm_B2e-3319951147NAC domain-containing protein 19
3swm_C2e-3319951147NAC domain-containing protein 19
3swm_D2e-3319951147NAC domain-containing protein 19
3swp_A2e-3319951147NAC domain-containing protein 19
3swp_B2e-3319951147NAC domain-containing protein 19
3swp_C2e-3319951147NAC domain-containing protein 19
3swp_D2e-3319951147NAC domain-containing protein 19
4dul_A2e-3319948144NAC domain-containing protein 19
4dul_B2e-3319948144NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9H1E91e-135A0A2N9H1E9_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-99NAC domain containing protein 17