PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0143.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 188aa    MW: 20131.4 Da    PI: 5.6883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0143.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-153180155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+G+r + +  +Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  Kaladp0043s0143.1.p 31 PRYRGIRARGT--KWVSEIREPRK---TNRIWLGTYPTPEMAAAAYDTAALALRG 80
                         68****97765..9*******854...49************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-93180IPR001471AP2/ERF domain
CDDcd000181.60E-143189No hitNo description
Gene3DG3DSA:3.30.730.103.3E-263289IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-173288IPR016177DNA-binding domain
SMARTSM003801.3E-263294IPR001471AP2/ERF domain
PROSITE profilePS5103219.6123288IPR001471AP2/ERF domain
PRINTSPR003675.3E-73344IPR001471AP2/ERF domain
PRINTSPR003675.3E-77090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MYEGAGANMR RTDRPHGEER GHSRPGKHTH PRYRGIRARG TKWVSEIREP RKTNRIWLGT  60
YPTPEMAAAA YDTAALALRG SDAVLNFPEF GNMYPAPASL SAADIRAAAE AAAAQRLRQP  120
VDEAVQGGGG GQTGVDQEYV DEDAIFDMPN YLAEMAEGMM VSPPRMKPPG GDDPGEGSSS  180
GGLWGYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1330931277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278525.11e-55PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ905e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A218X3F72e-54A0A218X3F7_PUNGR; Uncharacterized protein
STRINGXP_010278525.14e-55(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-30ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]