PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0222.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 364aa    MW: 40762.2 Da    PI: 6.5073
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-151150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         ie + +  +tf kR++g++KK eEL +LCd+ ++vii+++
  Kaladp0043s0222.1.p 11 IEAEKKLRTTFLKRKKGLIKKVEELTILCDVIACVIIYGP 50
                         67777889******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.119149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-16163IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-14162IPR002100Transcription factor, MADS-box
CDDcd002662.30E-18275No hitNo description
PRINTSPR004041.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MARGKTKLTL IEAEKKLRTT FLKRKKGLIK KVEELTILCD VIACVIIYGP VLGGRPREIF  60
TWPVEQHRVR AAIKMYKEKM DHSRRTADLC NYLKDRKRAE AGEAGGGRGG SGFRVGSIRP  120
DVAVAYLKWV DARIRAVEER IEFVKSGGRS VMLGDNMTTM MVPTGQDQSF GYESVQEWMV  180
PYDQALWVHS NNGLLCTNGV FDHVIQFQPQ EPNLGEFHHQ NQTQNQMVLY DTYLQGIEQN  240
YGMGMHVNSG GGWCHQQQPL YGETMQFSDS VAVAQPPMMS YNMDGMMQQL RRTEEWSSPE  300
AASSNQSPSP CDPFNKAAAL DAVPSCSFEE QLEYLFTAAE FCDEIQPQGD RHGGGVPSCH  360
NGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-08AGAMOUS-like 103