PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0224.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 534aa    MW: 60236 Da    PI: 6.8869
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0224.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.12.5e-2865147186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ e+laLi++r+em+ ++r++ +k+plW++vs+k+++ gf+rs+k+Ckek+en+ k+y+++ke+ ++   ++ +t++yf+qle
  Kaladp0043s0224.1.p  65 RWPRAETLALIKVRSEMDAAFRESGAKGPLWDDVSRKLAALGFSRSSKKCKEKFENIYKYYRRTKESGQR---PNGKTYRYFEQLE 147
                          8******************************************************************998...45668******97 PP
2trihelix104.48e-33363447186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ ev aLi +r+  + ++++++ k+plWee+s++m++rg+ rs+k+Ckekwen+nk++k++++++kkr +e+s+tcpyf+ l+
  Kaladp0043s0224.1.p 363 RWPRAEVEALISVRSTFDLQYQENSPKGPLWEEISAAMQRRGYDRSAKRCKEKWENINKYFKRVRDSNKKR-PEDSRTCPYFHLLD 447
                          8*********************************************************************8.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.00458122IPR017877Myb-like domain
SMARTSM007170.003462124IPR001005SANT/Myb domain
PfamPF138372.2E-1964147No hitNo description
CDDcd122031.61E-2464129No hitNo description
Gene3DG3DSA:1.10.10.603.0E-4355419IPR009057Homeodomain-like
PROSITE profilePS500907.41356420IPR017877Myb-like domain
SMARTSM007170.0027360422IPR001005SANT/Myb domain
PfamPF138371.5E-23362449No hitNo description
CDDcd122039.58E-25362427No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLGASSFTTT PAAAQGLLVV HGTASGKDLN AKGGGVDSQG AVGAFQDDER GRELEENDRN  60
FAGNRWPRAE TLALIKVRSE MDAAFRESGA KGPLWDDVSR KLAALGFSRS SKKCKEKFEN  120
IYKYYRRTKE SGQRPNGKTY RYFEQLEVID RQPSPLTAIL PSATDQLENA DRSSWIRATA  180
MAINVDPLSV CVNAGVDCPM QNAADNGGNG GNNVTNSSTW TNSTSKESEG MGRKAKKKRK  240
FSEFFDRLMT EVTMKQEELQ RRFAEAIERY EVDRIKREEA WRVQETARIR REHEMLAHER  300
SIAAAKDAAV IAILQKFLQQ EIPVHFTDDI PITVAPKEKS PEEQAKESYK ADSVLQNSYS  360
SSRWPRAEVE ALISVRSTFD LQYQENSPKG PLWEEISAAM QRRGYDRSAK RCKEKWENIN  420
KYFKRVRDSN KKRPEDSRTC PYFHLLDSLY KQKAGNSNPR LDGTASGQNN LMAPQSSYEM  480
EQQQNELARM VGSNMDPNPT PDESEEEQGI EDRENYQVVA NNSHPSMEEG HNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887620.11e-142trihelix transcription factor GT-2-like isoform X1
TrEMBLA0A1R3GCN91e-143A0A1R3GCN9_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_2611.11e-141(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-101Trihelix family protein