PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0043s0262.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 113aa MW: 13143.9 Da PI: 8.5531

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0043s0262.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	1	42	10	51
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +++NRe+ArrsR RK++ ++eL v L +eN+aL ++ ++ Kaladp0043s0262.1.p 1 MISNRESARRSRMRKQKHLDELWSQVTRLRTENHALLDKFNH 42 689*********************************988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-6	1	56	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-12	1	46	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.2E-12	1	68	No hit	No description
PROSITE profile	PS50217	8.783	1	57	IPR004827	Basic-leucine zipper domain
CDD	cd14702	8.41E-15	1	41	No hit	No description
Pfam	PF00170	1.5E-10	1	42	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MISNRESARR SRMRKQKHLD ELWSQVTRLR TENHALLDKF NHVFESHSQV VQENVKLKDE 60 VSQLRKMIAD LQITSPETFL RELREMPCIT DNAREASLKS NHSISSSIDL LD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530800.1	1e-44	basic leucine zipper 43
Swissprot	Q9FMC2	5e-26	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	B9SXT1	3e-43	B9SXT1_RICCO; Ocs element-binding factor, putative
STRING	XP_002530800.1	6e-44	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-33	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Kaladp0043s0262.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]