PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0294.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 418aa    MW: 47473.6 Da    PI: 4.4998
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0294.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65.1e-16174258286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt++e+ +L++a  ++  + +r++l+   W+ev++k+ +e ++er+ +qC+++ + l+k+ykk+k+  +    ++ss++ yf++++
  Kaladp0043s0294.1.p 174 WTEHETFVLLDAWGDRFLQHGRKSLRSEEWQEVAEKVsQESKIERTDTQCRNRVDTLKKKYKKEKAKFGAA-GGQSSKWIYFKKMD 258
                          *************************************88999*************************9986.78888********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-23173259No hitNo description
PROSITE profilePS500906.214174231IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-4174238IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDNEDDVRY NSNAAGGDRQ DQEGYDREKG AEQVGSYERL NNEYGENEGE DDEEAAEELV  60
EDEEEEEDDD DDDEDGDGVQ RIGNNVVNDG DEEDGDEGVE EKRNEYKRRI EEIDFEKHPK  120
KRRLKNLISN YEFAPRAVTQ AQPSAVTANV VAASAPPVPA PKHSSGGRNA LADWTEHETF  180
VLLDAWGDRF LQHGRKSLRS EEWQEVAEKV SQESKIERTD TQCRNRVDTL KKKYKKEKAK  240
FGAAGGQSSK WIYFKKMDVL MSPPPKQPGL SCGVDSGEYV FSNPRVYLNR ANGLDEMRDS  300
PGHSDSTEDD TYDSDGLPPR RKKPVRVNNT NSNSNSRNYC SPMKLLADSL HNFSKIYEKI  360
ESNKRQQMVE LEKMRMDFHR DLEQEKKLIL ERAQAKIAKI WKGNDDENGA SAENMSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106122KRRIEEIDFEKHPKKRR
2118125PKKRRLKN
3119124KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024178741.11e-136trihelix transcription factor ASIL2-like
RefseqXP_024178742.11e-136trihelix transcription factor ASIL2-like
RefseqXP_024178743.11e-136trihelix transcription factor ASIL2-like
TrEMBLA0A2P6RWQ21e-135A0A2P6RWQ2_ROSCH; Putative transcription factor MYB family
STRINGXP_006465549.11e-130(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-64Trihelix family protein