PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0044s0017.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 348aa MW: 37977.8 Da PI: 9.1252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0044s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.3e-11	280	325	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Kaladp0044s0017.1.p 280 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 325 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.151	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	277	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.31E-11	278	329	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	279	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	280	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	280	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MFPSSSESNS SSSYSQPSMA ARALNRNASV PADSLHADDD NNNHHRHHDF SPFLSPPHFN 60 LQPPPYHQYF SADSPSNCKV NNLNHHPPSE SKRLQRSGSG SDDFSIAANL KIGASSSSPP 120 LARRSSTPAG FVAADSGGFS VPRGSSNYSR GNSSNGPGTS RLKPPLSSTR QDSNMSQLSG 180 IAENIIEGLN HSNGHRETHN YAYANDAWDN GASITFSGPP SKRNKNEVEY LNSFTGLEHQ 240 FSLPQTTLEM ATVEKLLQIP EDSVPCKIRA KRGYATHPRS IAERERRTRI SGKLKKLQDL 300 VPNMDKQTSY ADMLDLAVQH IKGLQNQVQK LNKDMENCTC GCKRSTS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MFPSSSESNS SSSYSQPSMA ARALNRNASV PADSLHADDD NNNHHRHHDF SPFLSPPHFN  60
LQPPPYHQYF SADSPSNCKV NNLNHHPPSE SKRLQRSGSG SDDFSIAANL KIGASSSSPP  120
LARRSSTPAG FVAADSGGFS VPRGSSNYSR GNSSNGPGTS RLKPPLSSTR QDSNMSQLSG  180
IAENIIEGLN HSNGHRETHN YAYANDAWDN GASITFSGPP SKRNKNEVEY LNSFTGLEHQ  240
FSLPQTTLEM ATVEKLLQIP EDSVPCKIRA KRGYATHPRS IAERERRTRI SGKLKKLQDL  300
VPNMDKQTSY ADMLDLAVQH IKGLQNQVQK LNKDMENCTC GCKRSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925304.1	1e-104	transcription factor bHLH128-like
Swissprot	Q8H102	1e-67	BH128_ARATH; Transcription factor bHLH128
TrEMBL	F6I3R9	1e-103	F6I3R9_VITVI; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-104	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	1e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0044s0017.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]