PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0036.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ZF-HD

Protein Properties

Length: 312aa MW: 33812.4 Da PI: 6.7069

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.5	8.5e-30	91	144	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + Y+eClkNhA+++ gha+DGC+Efmp+ g eg+ +alkCaACgCHRnFHR+e+ Kaladp0045s0036.1.p 91 RPIYRECLKNHAINVMGHALDGCCEFMPA-GPEGSLDALKCAACGCHRNFHRKEE 144 568***********************9.999******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.8E-27	93	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-21	94	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.2E-26	94	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.118	94	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.33E-15	218	287	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	219	287	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.9E-24	226	282	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEFDDHHRHP HHHRHQRSEE EEDDEEEEEE ASDEMLMMNS SLNTNTNHNT VTSGGGGGGG 60 NNVSLSRARM VEALSQVQIQ PAPAVTAPSS RPIYRECLKN HAINVMGHAL DGCCEFMPAG 120 PEGSLDALKC AACGCHRNFH RKEEAVGGEP GAMLYSLSHP HLAHPGPGGF GSYYPHPAPP 180 GYLHLAPPRP LALPSSSGGG AAGGSQDDDV SNPNAIVAAG GSSNGKKRFR TKFTLEQKEK 240 MLAMAERIGW RIQRAEEELV QQFCQEAAVK RHVFKVWMHN NKHTLGRAAT TSNNHNNNNN 300 GGSSRQQQLM D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	4e-24	226	284	17	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830269.1	1e-75	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q9SB61	8e-64	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2I4FF48	3e-74	A0A2I4FF48_JUGRE; zinc-finger homeodomain protein 1-like
STRING	Gorai.003G042700.1	2e-73	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Kaladp0045s0036.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]