PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0237.9.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 682aa MW: 78436.2 Da PI: 7.1444

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0237.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.8e-07	1	26	66	91
FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vk++++gkw++++++++HnHel p Kaladp0045s0237.9.p 1 MHVKRRQTGKWYIYNFVKDHNHELLP 26 89*********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	4.9E-25	139	231	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	419	455	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-7	429	453	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-5	430	457	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MHVKRRQTGK WYIYNFVKDH NHELLPEQAH FFRSHRNVDS IKNDLRIRKR KILAAGSKQF 60 SAYQNVDFLE GYIRNQHDKG QILSLESGDS QMLLEFCMYM QDKNPKFFYA MDFNEEHRLR 120 NVFWVSSKGV DDYNYFSDVV SVDTTYVTAK YKIPLVIIMG VNNHIQPTLL GCGLIADETL 180 YTFVWLLQTW LISMGGRAPR VILTDQNSAL KQAVAAVLPE SRHCFALWNV LEKIPSKLEY 240 VIRWQDNFVI KFDKCIYKSL TEEQFESRWS KLLDRFTLRE DEWVQSLYED RRQWVPTFMR 300 DISFAGLSAP SRAESLNTWF DNYIDAYSSL REFIERYKLI VEDMHEEEAK ANFDGWHETP 360 DLKTPSPFEK QTLLVYTHEI FKKFQIEVLG AAACHLKKEN DYGTIATYSV KDFADNQVFM 420 VTWDQTKLDI GCSCRSFEYK GYVCRHAIVV LQMSGVFSIP FKYILQRWTN VAVSRHAMSD 480 RLDEVQAKIR RFNDLCRRAI ILGEEGSLSE QSYNVALIAI EDALKQFKNT SSLDCDSRPH 540 SALRQAFSGN EEVNDGSVAA AVHEVPGTSL TSSSKSQKRS DAGNKKFESY ESMMGKVQPV 600 QGLVNAGSQV GYAFMDNAHA TSLIPNAPLV AQHNMAPVRL QSLPAHIQNT MPAQYHSSIP 660 PYVEDKHIQD KSPPAHLVHM L*

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MHVKRRQTGK WYIYNFVKDH NHELLPEQAH FFRSHRNVDS IKNDLRIRKR KILAAGSKQF  60
SAYQNVDFLE GYIRNQHDKG QILSLESGDS QMLLEFCMYM QDKNPKFFYA MDFNEEHRLR  120
NVFWVSSKGV DDYNYFSDVV SVDTTYVTAK YKIPLVIIMG VNNHIQPTLL GCGLIADETL  180
YTFVWLLQTW LISMGGRAPR VILTDQNSAL KQAVAAVLPE SRHCFALWNV LEKIPSKLEY  240
VIRWQDNFVI KFDKCIYKSL TEEQFESRWS KLLDRFTLRE DEWVQSLYED RRQWVPTFMR  300
DISFAGLSAP SRAESLNTWF DNYIDAYSSL REFIERYKLI VEDMHEEEAK ANFDGWHETP  360
DLKTPSPFEK QTLLVYTHEI FKKFQIEVLG AAACHLKKEN DYGTIATYSV KDFADNQVFM  420
VTWDQTKLDI GCSCRSFEYK GYVCRHAIVV LQMSGVFSIP FKYILQRWTN VAVSRHAMSD  480
RLDEVQAKIR RFNDLCRRAI ILGEEGSLSE QSYNVALIAI EDALKQFKNT SSLDCDSRPH  540
SALRQAFSGN EEVNDGSVAA AVHEVPGTSL TSSSKSQKRS DAGNKKFESY ESMMGKVQPV  600
QGLVNAGSQV GYAFMDNAHA TSLIPNAPLV AQHNMAPVRL QSLPAHIQNT MPAQYHSSIP  660
PYVEDKHIQD KSPPAHLVHM L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274627.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	F6GYH1	0.0	F6GYH1_VITVI; Uncharacterized protein
STRING	VIT_09s0054g01830.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Kaladp0045s0237.9.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]