PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0271.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 123aa    MW: 13416.2 Da    PI: 10.2884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0271.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-1980114135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +Cg+ kTp+WR gpdg+ktLCnaCG++y++ +l
  Kaladp0045s0271.1.p  80 CKHCGSEKTPQWRAGPDGPKTLCNACGVRYKSGRL 114
                          *******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-1373111No hitNo description
PROSITE profilePS5011412.37474110IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-1174122IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-1478111IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.10E-1079116No hitNo description
PfamPF003208.7E-1780114IPR000679Zinc finger, GATA-type
PROSITE patternPS00344080105IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRVQFLENSN SSFGSNNSNA VITICCSGRD LAPPIRRRCQ RGRFVDIPSQ KWFVWCSNIQ  60
PNKTGNGAAK TTSGITGRKC KHCGSEKTPQ WRAGPDGPKT LCNACGVRYK SGRLCPEYQS  120
TS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022722855.13e-25GATA transcription factor 1-like
RefseqXP_022722856.13e-25GATA transcription factor 1-like
RefseqXP_022722857.13e-25GATA transcription factor 1-like
SwissprotQ8LAU92e-23GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2R6R8Z87e-24A0A2R6R8Z8_ACTCH; GATA transcription factor
TrEMBLA0A2Z6NL074e-24A0A2Z6NL07_TRISU; Uncharacterized protein
STRINGVIT_05s0051g00450.t012e-23(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-25GATA transcription factor 1