PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0327.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 272aa MW: 30024.6 Da PI: 4.5785

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0327.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	36.7	8.5e-12	202	222	2	22
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK vk+s+fpr Kaladp0045s0327.2.p 202 EDGYRWRKYGQKAVKNSPFPR 222 8*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-12	186	222	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-9	193	223	IPR003657	WRKY domain
PROSITE profile	PS50811	13.161	196	222	IPR003657	WRKY domain
SMART	SM00774	3.2E-5	201	235	IPR003657	WRKY domain
Pfam	PF03106	1.9E-7	202	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0009733	Biological Process	response to auxin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MMKKEAMESL ISGGSDTSSL CYLDLLGGGA AGYGNLCSMF DGGVVNGAGA DLGFLEMLGV 60 QEFQIPMGYM FDEMAHSGEV MTSSWQAISI DQVPAAGYNN GFVKPMNKRQ QPLFDDRNNN 120 APGTPNSSSI SYASNNEGMV VESEQDDKAD EEEDEEEDGD DAEDQKGSGK SKKQLKAKKG 180 KLKKQRQPRI AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF PRYKPTLTPM LTLPSQLFFK 240 NPDDGFYALQ ELLPLHQCIL WSEEKSGEIM H*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00069	PBM	Transfer from AT2G47260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	4e-19	WRKY DNA-binding protein 28

Link Out ? help Back to Top
Phytozome	Kaladp0045s0327.2.p