PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0451.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 454aa MW: 46693.8 Da PI: 4.6805

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0451.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.6	2.4e-21	23	72	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ie+k r +tfskR++gi+KKA+E+S++C+a+v+ i+fs+tgk y ++ Kaladp0045s0451.1.p 23 KLIEDKEDRVITFSKRKAGIFKKASEISIMCGAKVLFILFSPTGKAYSFA 72 569********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-28	15	74	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.74	15	75	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-25	16	101	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.12E-30	16	89	No hit	No description
PRINTS	PR00404	1.2E-16	17	37	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-21	25	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	37	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-16	52	73	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MERSAAAAAM KKTSRGRQKI PMKLIEDKED RVITFSKRKA GIFKKASEIS IMCGAKVLFI 60 LFSPTGKAYS FAHPSVKTVA DKFLGQEESE GGKQIRQILE NHLNKRLEKL LLHHSVARSE 120 LEAVNEQVRA MSAAMESENK GWWEANVSEM SSVEEVEQVM KSISDFEVAL SNHFEKLKQQ 180 TVGGEGSGNI NHIVAPYDQL GDVNIFPPQM NDNVQMPNWA GGNNLSNGGS LGGVDNLFDG 240 VNGAGLCGVG YGGSLPAAGN YGDSLGQGDG FIMPAAGSYG GTLGQGSDYS MLAAANGGAL 300 GQGTDHFSLP AAGNYGSTLG LGNGFSLPVV GNYGGTLDQG NGFSLPVAGN YGGALGQENC 360 FSMPAAGNYG GALGQENCFS MPAAGDGGTG GHTDDVSVWP GGTAFNGAGL YEGGSSGAGY 420 SGDNFGADFY GTGYGGNFMD GLPGPASGFQ GPC*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MERSAAAAAM KKTSRGRQKI PMKLIEDKED RVITFSKRKA GIFKKASEIS IMCGAKVLFI  60
LFSPTGKAYS FAHPSVKTVA DKFLGQEESE GGKQIRQILE NHLNKRLEKL LLHHSVARSE  120
LEAVNEQVRA MSAAMESENK GWWEANVSEM SSVEEVEQVM KSISDFEVAL SNHFEKLKQQ  180
TVGGEGSGNI NHIVAPYDQL GDVNIFPPQM NDNVQMPNWA GGNNLSNGGS LGGVDNLFDG  240
VNGAGLCGVG YGGSLPAAGN YGDSLGQGDG FIMPAAGSYG GTLGQGSDYS MLAAANGGAL  300
GQGTDHFSLP AAGNYGSTLG LGNGFSLPVV GNYGGTLDQG NGFSLPVAGN YGGALGQENC  360
FSMPAAGNYG GALGQENCFS MPAAGDGGTG GHTDDVSVWP GGTAFNGAGL YEGGSSGAGY  420
SGDNFGADFY GTGYGGNFMD GLPGPASGFQ GPC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	2e-24	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Kaladp0045s0451.1.p