PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0483.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 447aa    MW: 50572.6 Da    PI: 6.9261
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0483.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.4e-26119218186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                          +W++q+v++Li+a+++++++ ++g              +kk++W+++sk+m+ergf +sp+qC++k+++lnkryk+++++ +++ +++++
  Kaladp0045s0483.2.p 119 KWSDQMVKLLITAVSYVGQDASSGYrgggggrmkfalmQKKGKWKSISKVMAERGFYVSPQQCEDKFNDLNKRYKRLNDILGRGtSCQVV 208
                          7*******************998755566777888888**********************************************669999 PP

             trihelix  77 stcpyfdqle 86 
                          ++  ++d ++
  Kaladp0045s0483.2.p 209 EKPELLDMMD 218
                          9999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-22117244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEGNLNMVPG GGSYGGGLDQ QGSMRYNHHH RPSSHAVTDN DLRQGPALHP SIHDVFPPFT  60
VGTMQDCGDR SLSLADYNKA ERARNVTSDD DEPGVMEDAG NCHNGGGKGA KGSFWHRVKW  120
SDQMVKLLIT AVSYVGQDAS SGYRGGGGGR MKFALMQKKG KWKSISKVMA ERGFYVSPQQ  180
CEDKFNDLNK RYKRLNDILG RGTSCQVVEK PELLDMMDHL SEKSKEDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RALHLALESR EMSEISDGRR KSVDDYDEDD HGGESDDCDE  300
FEECHVAHGD SRALCGVMEG SSAKRTKQDL SHDEFSFGNA QEGCKISQLN TQNVHIAMNQ  360
AYPEGSKSAW YNSQMMQSRS LKLEEKRTKI QMEMLELEKQ RLKWQRFSKK KDRELEKMRL  420
ENERMKLENE SMALELKRRE IGLKGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473052.10.0uncharacterized protein LOC102612442
TrEMBLA0A067GYJ60.0A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBLV4V6N50.0V4V6N5_9ROSI; Uncharacterized protein
STRINGXP_006473052.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-138sequence-specific DNA binding transcription factors