PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0483.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 417aa MW: 47240.7 Da PI: 6.5116

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0483.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.9	1.8e-20	126	188	25	86
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +kk++W+++sk+m+ergf +sp+qC++k+++lnkryk+++++ +++ +++++++ ++d ++ Kaladp0045s0483.3.p 126 MQKKGKWKSISKVMAERGFYVSPQQCEDKFNDLNKRYKRLNDILGRGtSCQVVEKPELLDMMD 188 39*********************************************6699999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-17	127	214	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEGNLNMVPG GGSYGGGLDQ QGSMRYNHHH RPSSHAVTDN DLRQGPALHP SIHDVFPPFT 60 VGTMQDCGDR SLSLADYNKA ERARNVTSDD DEPGVMEDAG NCHNGGQDAS SGYRGGGGGR 120 MKFALMQKKG KWKSISKVMA ERGFYVSPQQ CEDKFNDLNK RYKRLNDILG RGTSCQVVEK 180 PELLDMMDHL SEKSKEDVRK ILSSKHLFYE EMCSYHNGNR LHLPHDPALQ RALHLALESR 240 EMSEISDGRR KSVDDYDEDD HGGESDDCDE FEECHVAHGD SRALCGVMEG SSAKRTKQDL 300 SHDEFSFGNA QEGCKISQLN TQNVHIAMNQ AYPEGSKSAW YNSQMMQSRS LKLEEKRTKI 360 QMEMLELEKQ RLKWQRFSKK KDRELEKMRL ENERMKLENE SMALELKRRE IGLKGD*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEGNLNMVPG GGSYGGGLDQ QGSMRYNHHH RPSSHAVTDN DLRQGPALHP SIHDVFPPFT  60
VGTMQDCGDR SLSLADYNKA ERARNVTSDD DEPGVMEDAG NCHNGGQDAS SGYRGGGGGR  120
MKFALMQKKG KWKSISKVMA ERGFYVSPQQ CEDKFNDLNK RYKRLNDILG RGTSCQVVEK  180
PELLDMMDHL SEKSKEDVRK ILSSKHLFYE EMCSYHNGNR LHLPHDPALQ RALHLALESR  240
EMSEISDGRR KSVDDYDEDD HGGESDDCDE FEECHVAHGD SRALCGVMEG SSAKRTKQDL  300
SHDEFSFGNA QEGCKISQLN TQNVHIAMNQ AYPEGSKSAW YNSQMMQSRS LKLEEKRTKI  360
QMEMLELEKQ RLKWQRFSKK KDRELEKMRL ENERMKLENE SMALELKRRE IGLKGD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473052.1	1e-163	uncharacterized protein LOC102612442
TrEMBL	A0A067GYJ6	1e-161	A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBL	V4V6N5	1e-161	V4V6N5_9ROSI; Uncharacterized protein
STRING	XP_006473052.1	1e-162	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-117	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Kaladp0045s0483.3.p