PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0046s0096.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 200aa MW: 23158.5 Da PI: 8.3704

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0096.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	39	124	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF vr+ + +s+++g+i+ r+f C++eg+++++kk +++++ r gCka+++vk +++gkw++t++++eHnH+l Kaladp0046s0096.1.p 39 FYGRYAQRMGFVVRVMACWRSEKDGRIIARRFGCNREGHKRPNKKL---GIKPKKSFRGGCKAMVRVKCDRSGKWVITNFVSEHNHPLE 124 9***************************************9998...99**********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-24	39	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MESDAFTPAL AEEEEEVAAQ QWEPLVGMEF DSEEAAKLFY GRYAQRMGFV VRVMACWRSE 60 KDGRIIARRF GCNREGHKRP NKKLGIKPKK SFRGGCKAMV RVKCDRSGKW VITNFVSEHN 120 HPLEDSNCDS RKEMDDKDLK IRELTRELNN KKRQCQFYKD QLDAIMNEVE KHVDELGKKA 180 DIAAINIMEF ESKKHKVLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526071.1	1e-65	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1J3CN94	2e-63	A0A1J3CN94_NOCCA; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
TrEMBL	A0A1J3JBK4	2e-63	A0A1J3JBK4_NOCCA; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRING	XP_010526071.1	4e-65	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-65	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0046s0096.1.p