PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0046s0311.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 506aa MW: 55690.2 Da PI: 6.7477

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0311.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	394	414	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +Cgk F ++ ++++H+++ H Kaladp0046s0311.2.p 394 CDKCGKAF-QQAEMEKHMKVfH 414 ******.********988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03152	6.9E-42	25	195	IPR004854	Ubiquitin fusion degradation protein UFD1
SuperFamily	SSF49599	2.48E-5	346	392	IPR008974	TRAF-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MQESLIAGKG IVFRRFLTPV LYEGSGDKIK LPLSCFKELS DEGAFDKGPL YFRLSVVRQN 60 SPSDPNPIGE DSQRSTHSGV LEFTADEDCV ALPRHVWNNL FPTDLIAAPL VEVRYVWLPK 120 GVYAKLQPDR IGFSDIPNHK AVLETILRHH ATLSENDLLT VNHGILTYTL RVLQLKPSSS 180 VSVLETDIEV DVVSPDKKSI TADQPYLQPL QLGKSESGAL DEGNYVYYKF SVNGDVWSII 240 ESGDANVCVK METGENDGDT DLYVSRHPLL FPTTHQHQWS SHDVGSKTLT MTAKDENLGA 300 GSYTVGVYGF KGTSKYKLTV TIEAAASQKV GPKATSKSQA VEVDTVECRN CKHSIPSRSI 360 TLHEAYCSRN NVTCKRPGCG VVLRVGEAKN HVHCDKCGKA FQQAEMEKHM KVFHEPLQCP 420 CGVLLEKEDM VQHQAADCPL RLITCRFCGD MVRAGNSAID VRDRMRGLSE HESGCGSRTA 480 PCSTCGRSVM LKDMDIHQVA VHPNN*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MQESLIAGKG IVFRRFLTPV LYEGSGDKIK LPLSCFKELS DEGAFDKGPL YFRLSVVRQN  60
SPSDPNPIGE DSQRSTHSGV LEFTADEDCV ALPRHVWNNL FPTDLIAAPL VEVRYVWLPK  120
GVYAKLQPDR IGFSDIPNHK AVLETILRHH ATLSENDLLT VNHGILTYTL RVLQLKPSSS  180
VSVLETDIEV DVVSPDKKSI TADQPYLQPL QLGKSESGAL DEGNYVYYKF SVNGDVWSII  240
ESGDANVCVK METGENDGDT DLYVSRHPLL FPTTHQHQWS SHDVGSKTLT MTAKDENLGA  300
GSYTVGVYGF KGTSKYKLTV TIEAAASQKV GPKATSKSQA VEVDTVECRN CKHSIPSRSI  360
TLHEAYCSRN NVTCKRPGCG VVLRVGEAKN HVHCDKCGKA FQQAEMEKHM KVFHEPLQCP  420
CGVLLEKEDM VQHQAADCPL RLITCRFCGD MVRAGNSAID VRDRMRGLSE HESGCGSRTA  480
PCSTCGRSVM LKDMDIHQVA VHPNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2yuj_A	1e-22	26	191	40	187	Ubiquitin fusion degradation 1-like
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273297.1	0.0	PREDICTED: uncharacterized protein LOC100246609
TrEMBL	F6HID7	0.0	F6HID7_VITVI; Uncharacterized protein
STRING	VIT_12s0059g01100.t01	0.0	(Vitis vinifera)

Link Out ? help Back to Top
Phytozome	Kaladp0046s0311.2.p