PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0047s0212.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 202aa MW: 21393.5 Da PI: 8.219

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0047s0212.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	5	65	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprCds ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGg++rk k+s Kaladp0047s0212.1.p 5 EEEKLKCPRCDSLNTKFCYYNNYNLSQPRHYCKSCKRYWTKGGSLRNIPVGGSSRKTTKRS 65 6899****************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-21	5	54	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-33	7	63	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.36	9	63	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	11	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MNFQEEEKLK CPRCDSLNTK FCYYNNYNLS QPRHYCKSCK RYWTKGGSLR NIPVGGSSRK 60 TTKRSSSSNS VTGKAAAPSS SNSAHRPESG PKHAFSDDQE STVLSMGGGA GGFGLSFSSL 120 SPSEGQLGHS ILGAMNGSGY GGFQSGLFGT AFGHKGLDSG TEVTNVSEGF LGIQHGNEQW 180 SSGGEHVWPD LAIYTPSPTF E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027336749.1	6e-52	dof zinc finger protein DOF3.1-like
Swissprot	O82155	7e-36	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A1U8ALW5	8e-50	A0A1U8ALW5_NELNU; dof zinc finger protein DOF3.1-like
STRING	XP_010267036.1	1e-50	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-30	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Kaladp0047s0212.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]