PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0263.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 412aa    MW: 45208.7 Da    PI: 6.5771
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0263.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15153212155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Kaladp0047s0263.1.p 153 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 212
                          789******************655454477446*************************98 PP
2AP248.71.9e-15255306155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kaladp0047s0263.1.p 255 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 306
                          78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-16153221IPR016177DNA-binding domain
CDDcd000181.53E-21153220No hitNo description
Gene3DG3DSA:3.30.730.107.0E-16154221IPR001471AP2/ERF domain
PROSITE profilePS5103218.663154220IPR001471AP2/ERF domain
SMARTSM003801.9E-29154226IPR001471AP2/ERF domain
PfamPF008471.0E-11154212IPR001471AP2/ERF domain
PRINTSPR003672.4E-6155166IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-18255316IPR016177DNA-binding domain
CDDcd000187.86E-25255316No hitNo description
PfamPF008473.7E-10255306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-19256314IPR001471AP2/ERF domain
SMARTSM003803.6E-34256320IPR001471AP2/ERF domain
PROSITE profilePS5103219.006256314IPR001471AP2/ERF domain
PRINTSPR003672.4E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MTDGDGARGA PRLENLLGCR YPNTDSLVEE CKASDEAYQT DLNFGQIGDL FGSYSDGGGD  60
GGDNGYGGVP FDGATSVSGL KSLMRLHPCS GCFYCEKSDN GVEPSDNLLA LCTSNGTSLG  120
SELSDHRKRA VEASAAVEPV PRKNTDTFGQ RTSQFRGVTR HRWTGRYEAH LWDNSCRKEG  180
QSRKGRQVYL GGYDKEEKAA RAYDLAALKY WGSTTHTNFP LVNYEKEVEE MKNLTRHEYV  240
ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  300
AIKFRGTSAV TNFDISRYDV KRICSSSTLI TNDSAKSKDS NPNSPEEDQC ENGSSCASSA  360
SAKHIIPVPT APHLSTDLCW SDDCIQSSRL SPIVYLDSYN EFQTARTGYM D*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024618.21e-145PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-127AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL41e-144A0A061GBL4_THECC; AP2 domain-containing transcription factor
STRINGEOY272401e-145(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-120AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]