PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0057.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 352aa    MW: 38929.8 Da    PI: 8.9846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.2e-16170216455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRdriN+++ +L++++P+a      K +Ka++L ++++Y+k+Lq
  Kaladp0048s0057.1.p 170 VHNQSERKRRDRINQKMKTLQKMVPNA-----SKTDKASMLDEVIKYLKQLQ 216
                          5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.13166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-19169236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.04E-16171220No hitNo description
SMARTSM003531.6E-16172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEPFYRLNDY DQVAELTWEN GQLGFQGLAP PAAHHSKSTW SAANETLESI VQQGSTVCHH  60
HHHPQQHSKL NRALNPAANI NSACSSFAAS SSNNHPVPWL ELDQCNARAE SLEPSACANN  120
LRQSNTVMTT TSTEEDFVYQ YGSDNKNEGH ESKGGTGRSS STRRSRTAAV HNQSERKRRD  180
RINQKMKTLQ KMVPNASKTD KASMLDEVIK YLKQLQSQIQ MMNSIRNMPQ MMVPLGIQQQ  240
QQQLQNQVSL FARTGMNMNM GLMGMGGALN MMHIPRSMSL QPAPQQLHPS ATTSTNTTFP  300
PSFLMVPPMI PTPEISQSMN MDLFTKMAAF CSHQATSNGT ATQEKNGPVS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571978.13e-75transcription factor PIF7 isoform X2
TrEMBLA0A061FXG33e-70A0A061FXG3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
TrEMBLA0A061G4L12e-70A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGEOY219715e-71(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-26bHLH family protein