PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0102.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 238aa MW: 25872.2 Da PI: 9.3294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0102.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.8e-09	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +i +++ L++l+P + sk Ka +L + ++Y++sLq Kaladp0048s0102.3.p 157 SHSLAERARRVKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 204 8***********************9....566***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-16	151	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.87E-7	151	204	No hit	No description
PROSITE profile	PS50888	14.799	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-16	153	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-6	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MELPLVNESS FTPASLASYS LEDFWPLGAG IGDHARVLGL RTANSERAGL GNRDGSAEES 60 TVTDQSFSRN GGGGRKRRLA DESSKVGEAS GGAGQLTSST KRVNILELKE EQKSMKDEVD 120 GTYVTGAKHA EQSTKVSEPS KLDYIHVRAR RGQATDSHSL AERARRVKIS ERMKILQDLV 180 PGCSKVIGKA LVLDEIINYV QSLQYQVEFL SMKLEAVNSS IVPKDKMLPA KDHRSRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831619.1	2e-81	PREDICTED: transcription factor bHLH79-like isoform X1
Swissprot	Q9LV17	2e-54	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2I4FIZ4	5e-80	A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRING	XP_004154996.1	2e-77	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	9e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0102.3.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]