PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0102.9.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 264aa    MW: 29021.7 Da    PI: 8.4324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0102.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09146193455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kaladp0048s0102.9.p 146 SHSLAERARRVKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 193
                          8*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.73E-7140193No hitNo description
SuperFamilySSF474599.68E-16140209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-16142209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-6148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MELPLVNESS FTPASLASYS LEDFWPLGAG IGDHARVLGL RTANSERAGL GNRDGSAEES  60
TVTDQSFSRN GGGGRKRRLA DESSKTSSTK RVNILELKEE QKSMKDEVDG TYVTGAKHAE  120
QSTKVSEPSK LDYIHVRARR GQATDSHSLA ERARRVKISE RMKILQDLVP GCSKVIGKAL  180
VLDEIINYVQ SLQYQVEFLS MKLEAVNSSI VPKDKMLPAK DLEVSGFDFA GMTFGTQPNS  240
KYAQGPQSEW LHMHLGRNFE RAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831619.16e-97PREDICTED: transcription factor bHLH79-like isoform X1
SwissprotQ69WS33e-64BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2I4FIZ41e-95A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGcassava4.1_013487m3e-93(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-62bHLH family protein