PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0116.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 65aa    MW: 7376.17 Da    PI: 5.6272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161655141
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                         rg W +eEd+ll ++v+++G+++W+tIa+ ++ gRt++q++
  Kaladp0048s0116.1.p 16 RGHWRPEEDQLLRNLVERFGPKNWNTIAEQVQ-GRTGNQLI 55
                         899*****************************.******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8961159IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-151554IPR009057Homeodomain-like
SuperFamilySSF466897.9E-131559IPR009057Homeodomain-like
SMARTSM007172.5E-71564IPR001005SANT/Myb domain
PfamPF002491.3E-141654IPR001005SANT/Myb domain
CDDcd001674.21E-121956No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MEGHEGDNDN QGATSRGHWR PEEDQLLRNL VERFGPKNWN TIAEQVQGRT GNQLIKPFVP  60
FVFI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522083.11e-13transcription factor MYB52 isoform X2
RefseqXP_024972764.11e-13transcription factor MYB52-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-14myb domain protein 52