PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0319.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 419aa MW: 45551.8 Da PI: 5.3811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0319.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Kaladp0048s0319.1.p 196 YECKTCNRTFPSFQALGGHRASH 218 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	280	302	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Kaladp0048s0319.1.p 280 HECSICGAEFSSGQALGGHMRRH 302 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	7.8E-13	195	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-8	195	218	No hit	No description
SMART	SM00355	0.052	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.159	196	223	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-8	275	302	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-4	276	304	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.1E-13	279	304	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.616	280	307	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	280	302	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	282	302	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDYAHNNSTK LQPDDNVSNI VSLIDNGCGR VNDDDDDDDD AVGLIDIKAT TTSGSINSNP 60 SEAPRNKEDD EEEQAQMKNH DNVVTATFQP PTTLITTMMI VKGKRTKRQR LHSPVVLHSY 120 NGNDTAQEEE EDEEEEEDND DEAAEELDMA NCLILLARGQ SPSIRRNELG LFTKLSSSSK 180 RFSSENKRVH GTSSVYECKT CNRTFPSFQA LGGHRASHKK LKITANDHFR QSAISDNTHS 240 PPSPLVITPS PSTLSLQLGN INYYSRAPSA HTNKSGHKVH ECSICGAEFS SGQALGGHMR 300 RHRGPMITLN SSTTTTTTTT TTTNNNNNPI ANTTLSLSTV IAVESPDTAA AKVNRINTSN 360 NNNGLLSLDL NLPASPSPSP EDHDHTNFSL APKQPQPQQP QQQSAVVFST PALVDCFY*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDYAHNNSTK LQPDDNVSNI VSLIDNGCGR VNDDDDDDDD AVGLIDIKAT TTSGSINSNP  60
SEAPRNKEDD EEEQAQMKNH DNVVTATFQP PTTLITTMMI VKGKRTKRQR LHSPVVLHSY  120
NGNDTAQEEE EDEEEEEDND DEAAEELDMA NCLILLARGQ SPSIRRNELG LFTKLSSSSK  180
RFSSENKRVH GTSSVYECKT CNRTFPSFQA LGGHRASHKK LKITANDHFR QSAISDNTHS  240
PPSPLVITPS PSTLSLQLGN INYYSRAPSA HTNKSGHKVH ECSICGAEFS SGQALGGHMR  300
RHRGPMITLN SSTTTTTTTT TTTNNNNNPI ANTTLSLSTV IAVESPDTAA AKVNRINTSN  360
NNNGLLSLDL NLPASPSPSP EDHDHTNFSL APKQPQPQQP QQQSAVVFST PALVDCFY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	3e-34	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0319.1.p