PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0335.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 458aa MW: 50290.8 Da PI: 7.1944

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0335.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	348	386	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Kaladp0048s0335.1.p 348 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 386 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.287	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.80E-5	346	390	No hit	No description
SuperFamily	SSF47459	9.42E-11	346	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	350	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MESANIPHHL DLHQEQQQQL LGPASSSSSS HEASYVHGSW YGASSNSSNH FAWSAKSPHM 60 NVDNKIYQSN NTQLYKQYTG EKDENDEIQI PWSNNNSHNN TCTSIKNDGQ HQTLILTHEQ 120 PSNSSKLDLF NSLLFPKFTD MLSSTQSSIE DLQHLSPTCY VKNDHFQDLN QHDTKSVTKP 180 ALLMSPSGLI QPQFQVGQFL ANTQNCSGYG GSPLMPSRGT FSQIFPSVNI SNMSSNQSCS 240 TISGSLDMNL QALDLLTSAR FGGAVNNDNQ SQPHHLGLAN ESHAFGQQHM QQFGHRPTAS 300 TPNKLPSPFL GGSITEAKRS QPAESKSSQA SSKKSRSETR ACPPLKVRKE KLGDRIAALQ 360 QLVAPFGKTD TASVLMEAIG YIKFLQNQIE TLSVPYMKSS RSRPMKQAHL MVDHDDSVES 420 KRDLRSRGLC LVPLSCMSYV TNEDGSGWPS TEYLGGT*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MESANIPHHL DLHQEQQQQL LGPASSSSSS HEASYVHGSW YGASSNSSNH FAWSAKSPHM  60
NVDNKIYQSN NTQLYKQYTG EKDENDEIQI PWSNNNSHNN TCTSIKNDGQ HQTLILTHEQ  120
PSNSSKLDLF NSLLFPKFTD MLSSTQSSIE DLQHLSPTCY VKNDHFQDLN QHDTKSVTKP  180
ALLMSPSGLI QPQFQVGQFL ANTQNCSGYG GSPLMPSRGT FSQIFPSVNI SNMSSNQSCS  240
TISGSLDMNL QALDLLTSAR FGGAVNNDNQ SQPHHLGLAN ESHAFGQQHM QQFGHRPTAS  300
TPNKLPSPFL GGSITEAKRS QPAESKSSQA SSKKSRSETR ACPPLKVRKE KLGDRIAALQ  360
QLVAPFGKTD TASVLMEAIG YIKFLQNQIE TLSVPYMKSS RSRPMKQAHL MVDHDDSVES  420
KRDLRSRGLC LVPLSCMSYV TNEDGSGWPS TEYLGGT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281118.2	1e-100	PREDICTED: transcription factor bHLH110 isoform X2
Swissprot	Q9SFZ3	4e-55	BH110_ARATH; Transcription factor bHLH110
TrEMBL	E0CQH4	2e-99	E0CQH4_VITVI; Uncharacterized protein
STRING	VIT_18s0001g12970.t01	1e-100	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0335.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]