PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0342.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 86aa    MW: 9489.64 Da    PI: 8.6975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0342.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091255344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +l+ +a + + ++   +W+ Ia+ +g g++++++k ++
  Kaladp0048s0342.1.p 12 SWTAKQNKLFEKALASYDKEtpdRWHNIAQAVG-GKSAEEVKRHY 55
                         7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.54E-12857IPR009057Homeodomain-like
SMARTSM007171.4E-7961IPR001005SANT/Myb domain
PROSITE profilePS500906.2841159IPR017877Myb-like domain
PfamPF002492.7E-71255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-51256IPR009057Homeodomain-like
CDDcd001674.58E-81255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSGSAYGYG SSWTAKQNKL FEKALASYDK ETPDRWHNIA QAVGGKSAEE VKRHYDLLVL  60
DLMHIESGHV PMPNYRNCGN GKSRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31479277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970206.11e-38PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A438JTN94e-36A0A438JTN9_VITVI; Protein RADIALIS-like 6
STRINGVIT_03s0063g02670.t018e-37(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-35RAD-like 6