PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0343.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 348aa    MW: 39143.8 Da    PI: 8.2341
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0343.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.99e-32111166359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eClkNhAas+G+++vDGCgEfmp  g+eg+ +alkCaAC+CHRnFHRre e 
  Kaladp0048s0343.1.p 111 GVRYRECLKNHAASMGTNVVDGCGEFMPG-GKEGSLEALKCAACQCHRNFHRRELEG 166
                          79**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-20106165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-29112164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-29113163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.731114163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-30234305IPR009057Homeodomain-like
SuperFamilySSF466892.21E-18239305IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-28244301IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEQYQQQQQQ QHNQIKLSQH HTTTPSPPRN LPPPPPLAYP PSSIEQPPRT HTSLHDRDPE  60
VEDKKNGVLF LSAPSAGMYG GGGGELQSPE SLKLSPVGTR SKPVKSASPS GVRYRECLKN  120
HAASMGTNVV DGCGEFMPGG KEGSLEALKC AACQCHRNFH RRELEGHESG SSNFARSVIV  180
HPLHLPPPTQ IPLHHHHPHH HHHHQIVQPV AVAYGGGATE SSSEDLVQAL DEMPQREAEP  240
GSVRKRFRTK FTQEQKDKML GFAERLGWRL QRQDDEVVER FCSEVGVRRQ VLKVWMHNNK  300
NSFKKPPDED QQQQTHNHPP TTHPQIQLQP QHHHLLQLHQ QKQQETL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-272453021875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022951673.19e-78zinc-finger homeodomain protein 2-like
SwissprotO647221e-64ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2N9GME92e-72A0A2N9GME9_FAGSY; Uncharacterized protein
STRINGXP_010539899.16e-73(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-56homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]