PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0360.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 248aa MW: 28130.6 Da PI: 7.9513

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0360.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	71	131	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++kr++r NR +A rs +RK +i eLe kv++L++e ++L ++ l+ e+a l s++ Kaladp0048s0360.1.p 71 DSKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQVTVLQRESAGLSSQN 131 68****************************************************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.0E-17	69	133	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	71	134	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-10	72	131	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-12	73	130	No hit	No description
SuperFamily	SSF57959	4.99E-12	73	125	No hit	No description
CDD	cd14703	7.81E-21	74	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDSFMSNMQF EEELPKLPAS PGPRAGEMSS SNLFDKNSNT FCLEFGNGEF SGAELKKIMA 60 NEKLAEIALA DSKRAKRILA NRQSAARSKE RKMRYISELE HKVQTLQTEA TTLSAQVTVL 120 QRESAGLSSQ NNELRFRLQA MEQKVQLCDA LNEALSAEVQ RFRFATQELS SNAQMFQQQS 180 YQFNSSQAQQ NNMINNDWSR IVHNGSQLKE VQVEDCEGRA SERWVCQDHV ISFSYTKIQP 240 MKVSRPR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027162353.1	2e-92	myb-like protein Z
Refseq	XP_027162354.1	2e-92	myb-like protein Z
Swissprot	Q69IL4	1e-46	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A068TM07	7e-91	A0A068TM07_COFCA; Uncharacterized protein
TrEMBL	A0A2R6RBR6	6e-91	A0A2R6RBR6_ACTCH; Transcription factor RF2a like
STRING	Solyc01g110480.2.1	1e-90	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-68	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0360.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]