PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0748.11.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 205aa MW: 23108.4 Da PI: 8.9637

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0748.11.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.9	6.3e-67	10	171	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q + + ++l+++ + ++l + + +++ + + ++s+ t Kaladp0048s0748.11.p 10 CPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSVLSWQDLHQHHQFTQLPNYLNGGQDNRIDHLGSSSKIT 98 68*******************************************999999999999888888888888888888877777776666 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +++ ++++ v+rPPek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Kaladp0048s0748.11.p 99 NKMTMR--VPVQKSIE-ERAVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 171 666644..44444444.4579***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-70	11	171	IPR006780	YABBY protein
SuperFamily	SSF47095	9.16E-8	112	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.1E-4	118	165	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGSSCVEVVC PEQLCYIPCN FCNIVLAVSV PCSSLFDIVT VRCGHCSNLW SVNMAAAFQS 60 VLSWQDLHQH HQFTQLPNYL NGGQDNRIDH LGSSSKITNK MTMRVPVQKS IEERAVNRPP 120 EKKQRVPSAY NQFIKEEIQR IKANNPDITH REAFSTAAKN WAHFPHIHFG LMLETNNNNQ 180 PTRFDQQNNA GKRLMSKAAG LMKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450896.1	8e-96	axial regulator YABBY 5 isoform X2
Refseq	XP_006475869.1	8e-96	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	2e-78	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1Q3CQH7	7e-95	A0A1Q3CQH7_CEPFO; YABBY domain-containing protein
STRING	VIT_11s0016g05590.t01	6e-94	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-81	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kaladp0048s0748.11.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]