PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0049s0023.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YA

Protein Properties

Length: 87aa MW: 10116.8 Da PI: 10.7382

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0049s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	44.8	4e-14	5	39	1	36
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 d p+YVNaKQy++I++RR Rak+e kk +++rk Kaladp0049s0023.1.p 5 DGPIYVNAKQYHGIIRRRLYRAKAELVKKS-IRARK 39 57************************9997.55554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-7	3	67	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	14.288	4	67	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.8E-12	7	48	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	9	29	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MTSDDGPIYV NAKQYHGIIR RRLYRAKAEL VKKSIRARKV PSLLAHLSYK YQELFKLRWT 60 GYPYAITFVV DGQLTFQNRD KIQKGP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.2	2e-11	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Kaladp0049s0023.1.p