PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0050s0049.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 301aa MW: 33837 Da PI: 10.0564

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0050s0049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	326	1.1e-99	1	300	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.maflqrdkalaernkalverdnkllall 85 mddd rn+gyyep+ +k +l+lqlm s+aerd+k+ r+ l + +++a++++ +++q ++ + ++ + + + +++ Kaladp0050s0049.1.p 1 MDDDDGF-RNWGYYEPS--FKGHLNLQLMPSVAERDTKPflpgRDPTLMINPNRGAYQHHPpHHHHQLNHHAHPHHTQEFDVSDSPMHMH 87 6666443.9****99..********************88888666666777666544455666666666666677777778888 PP GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqq..lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172 +++++ +++ + +++l+g s + + ++ ++ +++v +++e + +e+ ++ + + +kkr + pk++k kk kk ++ Kaladp0050s0049.1.p 88 YMRETWMHQRDKFMNILPGNPSFGIMPEppATQpLHMMEQPVM-PKTE--MVVRMEDPVPLK-AEGPTKKRPGGGAPKTPKIKKLKKGPS 173 8888878888888888888888877777322223223333332.2333..223333434433.3444555778999*******999 PP GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262 +k++ + +s +r+k +kk++d+v+ngv++D+s++P+PvC+CtGa++qCY+WG+GGWqSaCCtt+iSvyPLP+stkrrgaRiagrKmS Kaladp0050s0049.1.p 174 LPKENGNGSS--QRVKPPKKNVDVVINGVDMDISNIPIPVCTCTGASQQCYRWGCGGWQSACCTTSISVYPLPMSTKRRGARIAGRKMSL 261 9988887777..89************************************************************************ PP GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 gafkk+LekLa+eGy++ +p+DLk+hWAkHGtnkfvtir Kaladp0050s0049.1.p 262 GAFKKVLEKLASEGYNFTHPIDLKSHWAKHGTNKFVTIR 300 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.0E-110	1	300	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.7E-161	1	300	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDDDDGFRNW GYYEPSFKGH LNLQLMPSVA ERDTKPFLPG RDPTLMINPN RGAYQHHPPH 60 HHHQLNHHAH PHHTQEFDVS DSPMHMHYMR ETWMHQRDKF MNILPGNPSF GIMPEPPATQ 120 PLHMMEQPVM PKTEMVVRME DPVPLKAEGP TKKRPGGGAP KTPKIKKLKK GPSLPKENGN 180 GSSQRVKPPK KNVDVVINGV DMDISNIPIP VCTCTGASQQ CYRWGCGGWQ SACCTTSISV 240 YPLPMSTKRR GARIAGRKMS LGAFKKVLEK LASEGYNFTH PIDLKSHWAK HGTNKFVTIR 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268137.1	1e-144	GAGA-binding transcriptional activator BBR/BPC1-like
Refseq	XP_010649609.1	1e-144	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_010650043.1	1e-144	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_010650443.1	1e-144	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_019076461.1	1e-144	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
Refseq	XP_019076625.1	1e-144	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
Swissprot	Q9LDE2	1e-101	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	B2Z454	1e-142	B2Z454_VITVI; GAGA-binding transcriptional activator BBR/BPC1-like
STRING	VIT_01s0011g06380.t01	1e-142	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-101	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Kaladp0050s0049.1.p

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]