PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0050s0073.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 141aa MW: 15491.9 Da PI: 9.833

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0050s0073.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.8e-06	46	77	18	54
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++ L++l+ + +K + a++L++A+eYI+ L Kaladp0050s0073.2.p 46 ERIAALQQLVSPY-----GKTDTASVLTEAMEYIQFL 77 6899999999998.....9****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.039	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-9	30	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-11	33	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.34E-5	39	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MMEHKRSLSS SSSSSVNPVC LTSIPPKRHK PHLSISTKEK KDKFGERIAA LQQLVSPYGK 60 TDTASVLTEA MEYIQFLHDQ VKVLSAPYLQ STQPVKMQMY EAYNMRSRGL CLVPVSCTVG 120 VASSNGADIW APIKSTSPRY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021654519.1	9e-67	transcription factor bHLH153-like
Refseq	XP_021907053.1	8e-67	transcription factor bHLH153
Swissprot	Q7XJU2	4e-55	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A2R6S0E0	4e-65	A0A2R6S0E0_ACTCH; Transcription factor bHLH113 like
STRING	evm.model.supercontig_9.363	3e-66	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	2e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0050s0073.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]